安装mpi4py时构建Wheel失败的问题求助
2026-4-14
安装mpi4py时构建Wheel失败的问题求助
编辑补充：我尝试安装包含以下依赖的requirements文件后出现了错误
安装过程中的部分输出：
Collecting mpi4py==3.1.5 Downloading mpi4py-3.1.5.tar.gz (2.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 4.0 MB/s eta 0:00:00 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done ... Building wheels for collected packages: mpi4py, pycocotools, diffdist, mup, deepspeed Building wheel for mpi4py (pyproject.toml) ... error
我的requirements文件内容如下：
pillow==9.4.0 opencv-python==4.8.1.78 pyyaml==6.0.1 json_tricks==3.17.3 yacs==0.1.8 scikit-learn==1.3.1 pandas==2.0.3 timm==0.4.12 numpy==1.26.4 einops==0.8.0 fvcore==0.1.5.post20221221 transformers==4.34.0 sentencepiece==0.1.99 ftfy==6.1.1 regex==2023.10.3 nltk==3.8.1 mpi4py==3.1.5 vision-datasets==0.2.2 cython==3.0.2 pycocotools==2.0.7 diffdist==0.1 #pyarrow==13.0.0 #cityscapesscripts==2.2.2 #shapely==1.8.0 scikit-image==0.21.0 mup==1.0.0 accelerate==0.23.0 kornia==0.7.0 deepspeed==0.10.3 #wandb==0.15.12 infinibatch==0.1.1 open-clip-torch==2.26.1 git+https://github.com/MaureenZOU/detectron2-xyz.git #gradio==3.42.0 #torch==2.3.1 #2.0.1 #torchvision==0.15.2 #torchaudio==2.0.2 #torch==2.1.0 #torchvision==0.16.0
之后我单独尝试安装mpi4py库，执行命令pip install mpi4py，还是遇到了构建错误，完整的错误输出如下：
(biomedparse) vusynhathoang@Nevermore:/mnt/d/AI/BiomedParse$ pip install mpi4py Collecting mpi4py Using cached mpi4py-4.0.1.tar.gz (466 kB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Building wheels for collected packages: mpi4py Building wheel for mpi4py (pyproject.toml) ... error error: subprocess-exited-with-error × Building wheel for mpi4py (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [316 lines of output] running bdist_wheel running build running build_src using Cython 3.0.11 cythonizing 'src/mpi4py/MPI.pyx' -> 'src/mpi4py/MPI.c' running build_py creating build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/run.py -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/typing.py -> build/lib.linux-x86_64-cpython-39/mpi4py creating build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/util.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures creating build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/sync.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/pool.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/typing.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/py.typed -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/MPI_api.h -> build/lib.linux-x86_64-cpython-39/mpi4py copying src/mpi4py/MPI.h -> build/lib.linux-x86_64-cpython-39/mpi4py creating build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/pycapi.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/util.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/_base.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/pool.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/sync.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/bin/mpicc MPI C++ compiler: /usr/bin/mpicxx checking for MPI compile and link ... /usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -I/home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -I/home/vusynhathoang/miniconda3/envs/biomedparse/include/python3.9 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o /usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -I/home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -O2 -isystem /home/vusynhathoang/miniconda3/envs/biomedparse/include -fPIC -I/home/vusynhathoang/miniconda3/envs/biomedparse/include/python3.9 -c _configtest.c -o _configtest.o /usr/bin/mpicc -pthread -B /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat _configtest.o -o _configtest /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: warning: libopen-rte.so.40, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: warning: libopen-pal.so.40, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) # 中间省略了至少50条类似的未定义引用错误 /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64' /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `MPIR_being_debugged' /home/vusynhathoang/miniconda3/envs/biomedparse/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o error: Cannot link MPI programs. Check your configuration!!! [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for mpi4py Failed to build mpi4py ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (mpi4py)
我已经试过用pip和conda两种方式安装mpi4py，都没能解决这个构建失败的问题，也尝试过参考相关问题的解决方案，但还是卡住了。有没有大佬能帮我看看这到底是哪里出问题了，该怎么解决呢？
备注：内容来源于stack exchange，提问作者Otis Willie
