R使用gratia::draw()生成带rugplot的可编辑GAM偏效应图
R GAM绘图问题:给gratia生成的偏效应图添加正确rug plot
我的问题大部分已被如下帖子解答:Cannot update/edit ggplot2 object exported from a package (gratia) in R,我提及的mydraw.gam函数就来自该帖子的代码。我希望使用mydraw.gam函数生成和gratia::draw()效果一致的带rugplot的偏效应图。
示例数据
dput(LMB.stack) structure(list(X1 = c(0.0541887294548451, 0.0721473880136936, 0.0175421164050594, 0.0215182766921787, 0.0440735967747106, 0.046669040060852, 0.0526230550013067, 0.112833597945919, 0.063812034754301, 0.0940158338572872, 0.0506721208894938, 0.0127474420783362, 0.0657879523145501, 0.0541887294548451, 0.0721473880136936, 0.0175421164050594, 0.0215182766921787, 0.0440735967747106, 0.046669040060852, 0.0526230550013067, 0.112833597945919, 0.063812034754301, 0.0940158338572872, 0.0506721208894938, 0.0127474420783362, 0.0382272328188603, 0.0541887294548451, 0.0721473880136936, 0.0175421164050594, 0.0215182766921787, 0.0440735967747106, 0.046669040060852, 0.0526230550013067, 0.112833597945919, 0.063812034754301, 0.0940158338572872, 0.0506721208894938, 0.0127474420783362, 0.0657879523145501, 0.0382272328188603, 0.0541887294548451, 0.0721473880136936, 0.0175421164050594, 0.0215182766921787, 0.0440735967747106, 0.046669040060852, 0.0526230550013067, 0.0056727211129064, 0.063812034754301, 0.0940158338572872, 0.106570293080958, 0.116604915677637, 0.0422424508991219, 0.109071218434758, 0.0666150693773212, 0.108073813949563, 0.0394885672397296, 0.0688845434754768, 0.0530021292114909, 0.106570293080958, 0.116604915677637, 0.0422424508991219, 0.109071218434758, 0.0666150693773212, 0.108073813949563, 0.0411444155997384, 0.0394885672397296, 0.0688845434754768, 0.0530021292114909, 0.106570293080958, 0.116604915677637, 0.0422424508991219, 0.109071218434758, 0.0666150693773212, 0.108073813949563, 0.0411444155997384, 0.0394885672397296, 0.0688845434754768, 0.0530021292114909, 0.0578017962016202, 0.106570293080958, 0.116604915677637, 0.0422424508991219, 0.109071218434758, 0.0666150693773212, 0.174633119183298, 0.0645268299068541, 0.0709485215243274, 0.0682173756351461, 0.0643514854635756, 0.014808611175444, 0.163637352944664, 0.0599393459014399, 0.134349635442672, 0.214544784680364, 0.0460287439577173, 0.0692001626120574, 0.0682173756351461, 0.0643514854635756, 0.014808611175444), X2 = c(0.64, 0.47, 0.598, 0.52, 0.41, 1.38, 0.53, 0.73, 0.367, 0.58, 0.75, 0.38, 0.227, 0.39, 0.36, 0.35, 0.41, 0.84, 0.53, 0.55, 0.33, 0.33, 0.356, 0.58, 0.33, 0.52, 0.43, 0.53, 0.45, 0.37, 0.54, 0.98, 0.789, 0.44, 0.23, 0.21, 0.67144, 0.37, 0.38, 0.18, 0.24, 0.36, 0.37, 0.16, 0.58, 0.44, 0.41, 0.16, 0.13, 0.55, 0.99, 2.31, 1.264, 1.005, 1.345, 1.24, 1.665, 1.545, 0.799, 0.736, 1.237, 0.776, 0.742, 1.0259, 0.66, 1.17, 0.864, 1.191, 0.631, 0.745, 0.866, 0.917, 1.105, 1.04, 0.517, 1.236, 1.066, 1.35, 0.947, 0.74, 0.62, 1.572, 0.56, 1.189, 0.645, 0.9, 0.74, 0.568, 1.14, 1.159, 1.325, 1.217, 1.37, 1.147, 1.89, 1.19, 1.3, 0.73, 0.693, 1.06)), row.names = c(NA, 100L), class = "data.frame")
模型构建代码
使用mgcv构建GAM模型的代码如下:
LMB.gam<-gam(X2~s(X1), data = LMB.stack)
调用gratia包的draw(LMB.gam)命令得到的偏效应图如下:
自定义绘图代码
调用mydraw.gam命令并尝试添加rug plot的代码如下:
p<-mydraw.gam(LMB.gam) p[[1]] + geom_rug(position = "jitter",sides="b")
得到的效果如下:
待解决问题
如何在gratia::draw生成的可编辑ggplot格式偏效应图上,添加和实际数据对应的正确rug plot?
内容的提问来源于stack exchange,提问作者David Smith
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