如何用ggplot2将流式细胞术数据绘制成地铁图样式?
用ggplot2绘制流式细胞术数据的地铁图样式
我想用ggplot2将流式细胞术(Flow Cytometry)数据绘制成类似下图的地铁图样式:
我可以提供包含清晰节点的完整路径可复现数据:
fullPopulationPaths = c("root", "/Single Cells", "/Single Cells/Live", "/Single Cells/Live/CD45 int CD123+", "/Single Cells/Live/CD45 int CD123+/CD45 int CD123+ DR-CD38+ Basophils", "/Single Cells/Live/CD45+", "/Single Cells/Live/CD45+/Lymphocytes", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR+", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR+/CCR7+TCRgd+", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR+/CCR7-", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR+/CCR7-CD45RA++TCRgd+", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-/CD3+ CD56-" , "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-/CD3+ CD56-/CD4+", "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-/CD3+ CD56-/CD4+/CD4+CD45RA++CCR7+" , "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-/CD3+ CD56-/CD4+/CD4+CD45RA++CCR7+/naive CD4+" , "/Single Cells/Live/CD45+/Lymphocytes/CD3+ TCR-/CD3+ CD56-/CD4+/CD4+CD45RA-CCR7+")
我尝试了Stack Overflow帖子《how to create a subway map visualisation of my data》中的代码,但该代码对我的数据无效。
内容的提问来源于stack exchange,提问作者Agustina Conrrero
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