Ubuntu环境下R Studio运行dev_mode报错及AnnotationBustR安装求助

直接解决方案 #

• 手动创建缺失的目录
  在R控制台执行：

  dir.create("/home/user/R-dev", recursive = TRUE)
  

  或者在Ubuntu终端执行：

  mkdir -p /home/user/R-dev
  

• 重新启动开发模式：

  devtools::dev_mode(on = TRUE)
  

原因说明 #

dev_mode() 默认需要在用户主目录下创建 R-dev 目录，用来存放开发模式下安装的R包。当该目录不存在时，就会触发文件未找到的ENOENT错误，手动创建后即可正常运行。

解决该问题后，即可按照AnnotationBustR的官方文档流程完成包的安装。

环境信息 #

> sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=ro_RO.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=ro_RO.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=ro_RO.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=ro_RO.UTF-8 LC_IDENTIFICATION=C        

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base      

other attached packages:
[1] devtools_2.4.5 usethis_2.1.6 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.10       rstudioapi_0.14   magrittr_2.0.3    pkgload_1.3.2     xtable_1.8-4     
 [6] R6_2.5.1          rlang_1.1.0       fastmap_1.1.1     urlchecker_1.0.1  stringr_1.5.0    
[11] tools_4.2.3       pkgbuild_1.4.0    sessioninfo_1.2.2 miniUI_0.1.1.1    cli_3.6.1        
[16] remotes_2.4.2     htmltools_0.5.5   ellipsis_0.3.2    digest_0.6.31     lifecycle_1.0.3  
[21] crayon_1.5.2      processx_3.8.0    shiny_1.7.4       purrr_1.0.1       callr_3.7.3      
[26] later_1.3.0       htmlwidgets_1.6.2 profvis_0.3.7     vctrs_0.6.1       fs_1.6.1         
[31] promises_1.2.0.1  ps_1.7.4          memoise_2.0.1     glue_1.6.2        cachem_1.0.7     
[36] mime_0.12         stringi_1.7.12    compiler_4.2.3    prettyunits_1.1.1 httpuv_1.6.9  

内容的提问来源于stack exchange，提问作者Mihai Stan