R版本更新后ggcyto函数运行报错求助
ggcyto报错:attempt to apply non-function 问题求助
更新R版本后,运行ggcyto包手册中的示例代码时出现报错,无法正常使用函数。
运行代码:
data(GvHD) fs <- GvHD[1:3] #construct the `ggcyto` object (inherits from `ggplot` class) p <- ggcyto(fs, aes(x = `FSC-H`))
报错信息:
Error in guides$setup(scales, aesthetics, default = params$guide_default %||% : attempt to apply non-function
已尝试的解决方法:删除R、RStudio以及/Library/Frameworks/R.framework/Versions/4.2/Resources/library下的所有相关文件,重新安装后问题依旧。
以下是两次更新包前后的sessionInfo()输出:
更新前sessionInfo()
> sessionInfo() R version 4.0.3 (2020-10-10) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.7 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] ggcyto_1.18.0 flowWorkspace_4.2.0 ncdfFlow_2.36.0 BH_1.84.0-0 RcppArmadillo_0.12.8.4.0 [6] flowCore_2.2.0 ggplot2_3.5.1 loaded via a namespace (and not attached): [1] tidyselect_1.2.1 lattice_0.22-6 colorspace_2.1-0 vctrs_0.6.5 generics_0.1.3 stats4_4.0.3 base64enc_0.1-3 [8] XML_3.99-0.9 utf8_1.2.4 rlang_1.1.4 hexbin_1.28.3 pillar_1.9.0 glue_1.7.0 withr_3.0.0 [15] aws.s3_0.3.21 Rgraphviz_2.34.0 BiocGenerics_0.36.1 RColorBrewer_1.1-3 plyr_1.8.9 jpeg_0.1-10 matrixStats_1.3.0 [22] lifecycle_1.0.4 zlibbioc_1.36.0 RProtoBufLib_2.2.0 munsell_0.5.1 gtable_0.3.5 cytolib_2.2.1 labeling_0.4.3 [29] latticeExtra_0.6-30 Biobase_2.50.0 parallel_4.0.3 curl_5.2.1 fansi_1.0.6 Rcpp_1.0.12 scales_1.3.0 [36] BiocManager_1.30.23 S4Vectors_0.28.1 RcppParallel_5.1.7 graph_1.68.0 farver_2.1.2 deldir_2.0-4 interp_1.1-6 [43] gridExtra_2.3 png_0.1-8 digest_0.6.35 dplyr_1.1.4 grid_4.0.3 cli_3.6.2 tools_4.0.3 [50] magrittr_2.0.3 tibble_3.2.1 aws.signature_0.6.0 pkgconfig_2.0.3 data.table_1.15.4 xml2_1.3.3 httr_1.4.7 [57] R6_2.5.1 compiler_4.0.3
更新多个包后sessionInfo()(仍报错)
R version 4.2.3 (2023-03-15) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.7 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] ggcyto_1.26.4 flowWorkspace_4.10.1 ncdfFlow_2.44.0 BH_1.84.0-0 flowCore_2.10.0 ggplot2_3.5.1 loaded via a namespace (and not attached): [1] Rcpp_1.0.12 BiocManager_1.30.23 plyr_1.8.9 pillar_1.9.0 compiler_4.2.3 cytolib_2.10.1 RColorBrewer_1.1-3 tools_4.2.3 zlibbioc_1.44.0 lattice_0.22-6 [11] lifecycle_1.0.4 tibble_3.2.1 gtable_0.3.5 pkgconfig_2.0.3 rlang_1.1.4 graph_1.76.0 cli_3.6.2 Rgraphviz_2.42.0 hexbin_1.28.3 gridExtra_2.3 [21] withr_3.0.0 dplyr_1.1.4 generics_0.1.3 S4Vectors_0.36.2 vctrs_0.6.5 stats4_4.2.3 grid_4.2.3 tidyselect_1.2.1 glue_1.7.0 data.table_1.15.4 [31] Biobase_2.58.0 R6_2.5.1 fansi_1.0.6 XML_3.99-0.16.1 farver_2.1.2 RProtoBufLib_2.10.0 magrittr_2.0.3 scales_1.3.0 matrixStats_1.3.0 BiocGenerics_0.44.0 [41] colorspace_2.1-0 labeling_0.4.3 utf8_1.2.4 munsell_0.5.1
恳请提供技术帮助。
内容的提问来源于stack exchange,提问作者Homap
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